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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842012, updated on 18-Sep-2024

Summary

Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G55630
Locus tag
AT1G55630
See related
Araport:AT1G55630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20N2.6
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Genomic context

Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (20791635..20793581, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene chloride channel F Neighboring gene tRNA-Ser Neighboring gene prenylated RAB acceptor 1.G1 Neighboring gene HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein Neighboring gene ncRNA

General gene information

NM_104439.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion  

General protein information

Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_175959.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G60050.1); Has 42670 Blast hits to 13056 proteins in 286 species: Archae - 4; Bacteria - 35; Metazoa - 418; Fungi - 534; Plants - 40367; Viruses - 0; Other Eukaryotes - 1312 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20791635..20793581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104439.4 → NP_175959.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175959.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7X6A5, Q9LG03
    Conserved Domains (5) summary
    sd00004
    Location:364 → 391
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:391 → 424
    PPR_1; PPR repeat
    pfam13041
    Location:360 → 408
    PPR_2; PPR repeat family
    pfam13812
    Location:292 → 325
    PPR_3; Pentatricopeptide repeat domain
    cl03252
    Location:322 → 349
    PPR; PPR repeat
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