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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842000, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT1G55530
Locus tag
AT1G55530
See related
Araport:AT1G55530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5A14.7; T5A14_7
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (20729125..20731356, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene branched-chain alpha-keto acid decarboxylase E1 beta subunit Neighboring gene TATA binding protein 2 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Nuclear pore complex protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001333718.1
NM_001333719.1
NM_104428.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_564693.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13430.3); Has 11045 Blast hits to 10950 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 3210; Fungi - 1082; Plants - 5106; Viruses - 41; Other Eukaryotes - 1598 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20729125..20731356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104428.4 → NP_564693.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564693.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJI6, A0A5S9WRY6, Q9ZVU8
    Conserved Domains (2) summary
    pfam13639
    Location:222 → 264
    zf-RING_2; Ring finger domain
    pfam14369
    Location:7 → 39
    zinc_ribbon_9; zinc-ribbon

  2. NM_001333718.1 → NP_001321432.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJI6, A0A5S9WRY6, Q9ZVU8

  3. NM_001333719.1 → NP_001321433.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQV3, A0A7G2E0W9
Nucleotide Protein
Heading Accession and Version

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