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RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841945, updated on 18-Sep-2024

Summary

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Official Full Name
RNI-like superfamily protein
Primary source
TAIR:AT1G55030
Locus tag
AT1G55030
See related
Araport:AT1G55030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14C21.30; F14C21_30
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (20530417..20532151, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene plant defensin 1.5 Neighboring gene miscRNA Neighboring gene lipoxygenase 1 Neighboring gene miscRNA Neighboring gene zinc finger (Ran-binding) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RNI-like superfamily protein
NP_175901.1
  • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 1671 Blast hits to 1640 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 2; Plants - 1624; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20530417..20532151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333686.1 → NP_001321463.1  RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQZ2, A0A5S9WMF3

  2. NM_104377.1 → NP_175901.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175901.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C7M1
    UniProtKB/TrEMBL
    A0A178WG50, A0A5S9WMF3
    Conserved Domains (4) summary
    sd00032
    Location:133 → 154
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:154 → 179
    LRR_2; Leucine Rich Repeat
    pfam00646
    Location:11 → 53
    F-box; F-box domain
    pfam08387
    Location:345 → 389
    FBD
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7M1.1

Gene LinkOut

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