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Fcf2 pre-rRNA processing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841918, updated on 18-Sep-2024

Summary

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Official Full Name
Fcf2 pre-rRNA processing protein
Primary source
TAIR:AT1G54770
Locus tag
AT1G54770
See related
Araport:AT1G54770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22H22.18; T22H22_18
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (20434550..20436453)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene AGAMOUS-like 85 Neighboring gene uncharacterized protein Neighboring gene Plant thionin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001333674.1
NM_104352.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Fcf2 pre-rRNA processing protein
NP_001319234.1
  • Fcf2 pre-rRNA processing protein; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: Fcf2 pre-rRNA processing protein (TAIR:AT5G30495.1); Has 332 Blast hits to 332 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20434550..20436453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333674.1 → NP_001319234.1  Fcf2 pre-rRNA processing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W2A2, A0A384KZR6, A0A5S9WPS5, Q84K05
    Conserved Domains (1) summary
    pfam08698
    Location:64 → 158
    Fcf2; Fcf2 pre-rRNA processing

  2. NM_104352.4 → NP_175875.1  Fcf2 pre-rRNA processing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175875.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W2A2, A0A384KZR6, A0A5S9WPS5, Q84K05
    Conserved Domains (1) summary
    pfam08698
    Location:64 → 158
    Fcf2; Fcf2 pre-rRNA processing
Nucleotide Protein
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