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pre-mRNA-splicing factor-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841901, updated on 18-Sep-2024

Summary

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Official Full Name
pre-mRNA-splicing factor-like protein
Primary source
TAIR:AT1G54590
Locus tag
AT1G54590
See related
Araport:AT1G54590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22H22.4; T22H22_4
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (20391560..20393503, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene acyl carrier protein 2 Neighboring gene miscRNA Neighboring gene Protein kinase superfamily protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pre-mRNA-splicing factor-like protein
NP_175861.2
  • INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: splicing factor Prp18 family protein (TAIR:AT1G03140.1); Has 388 Blast hits to 388 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 132; Plants - 48; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20391560..20393503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104337.2 → NP_175861.2  pre-mRNA-splicing factor-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175861.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W7T4, A0A5S9WMB2, A0A654EIF7, F4HWZ0
    Conserved Domains (1) summary
    pfam02840
    Location:172 → 310
    Prp18; Prp18 domain
Nucleotide Protein
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