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F-box and associated interaction domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841897, updated on 18-Sep-2024

Summary

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Official Full Name
F-box and associated interaction domains-containing protein
Primary source
TAIR:AT1G54550
Locus tag
AT1G54550
See related
Araport:AT1G54550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D21.36; F20D21_36
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (20369651..20370986)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Calcium-binding EF hand family protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Myosin family protein with Dil domain-containing protein Neighboring gene Esterase/lipase/thioesterase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_104333.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
F-box and associated interaction domains-containing protein
NP_564661.1
  • F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G49520.1); Has 1132 Blast hits to 1091 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20369651..20370986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104333.1 → NP_564661.1  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564661.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SLH9
    UniProtKB/TrEMBL
    A0A178W4E9, A0A5S9WLU0
    Conserved Domains (2) summary
    smart00256
    Location:7 → 46
    FBOX; A Receptor for Ubiquitination Targets
    pfam07734
    Location:196 → 356
    FBA_1; F-box associated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SLH9.1

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