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dehydrin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841883, updated on 18-Sep-2024

Summary

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Official Full Name
dehydrin family protein
Primary source
TAIR:AT1G54410
Locus tag
AT1G54410
See related
Araport:AT1G54410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtHIRD11; dehydrin 11kDa; HIRD11
Summary
Encodes a KS-type dehydrin can reduce the formation of reactive oxygen species (ROS) from Cu.
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (20309473..20310850, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PHD finger protein-like protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene uncharacterized protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Metal ion - Dehydrin interactions investigated by affinity capillary electrophoresis and computer models. Nachbar M, et al. J Plant Physiol, 2017 Sep. PMID 28756342
  2. The Arabidopsis KS-type dehydrin recovers lactate dehydrogenase activity inhibited by copper with the contribution of His residues. Hara M, et al. Plant Sci, 2016 Apr. PMID 26940498
  3. A KS-type dehydrin and its related domains reduce Cu-promoted radical generation and the histidine residues contribute to the radical-reducing activities. Hara M, et al. J Exp Bot, 2013 Apr. PMID 23382551, Free PMC Article
  4. Molecular characterization of the cold- and heat-induced Arabidopsis PXL1 gene and its potential role in transduction pathways under temperature fluctuations. Jung CG, et al. J Plant Physiol, 2015 Mar 15. PMID 25602612
  5. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The AtHIRD11-Cu(2+)-complex is a first approach towards a complex model for a structural versatile protein, which is already sufficient to explain binding data and possible structure elements.
    Title: Metal ion - Dehydrin interactions investigated by affinity capillary electrophoresis and computer models.
  2. These results indicate that AtHIRD11 can reactivate LDH inhibited by Cu(2+) via the His residues.
    Title: The Arabidopsis KS-type dehydrin recovers lactate dehydrogenase activity inhibited by copper with the contribution of His residues.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_104319.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of hydrogen peroxide biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
dehydrin family protein
NP_175843.1
  • dehydrin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 604 Blast hits to 498 proteins in 128 species: Archae - 0; Bacteria - 12; Metazoa - 151; Fungi - 65; Plants - 159; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20309473..20310850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104319.6 → NP_175843.1  dehydrin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175843.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H7A6, Q8LG75, Q9SLJ2
    UniProtKB/TrEMBL
    A0A178WR56, A0A5S9WPL8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SLJ2.1

Gene LinkOut

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