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hypothetical protein (DUF641) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841774, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF641)
Primary source
TAIR:AT1G53380
Locus tag
AT1G53380
See related
Araport:AT1G53380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12M16.27; F12M16_27
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (19912990..19916686, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Ubiquitin domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036103.3
NM_001084242.2
NM_001333592.1
NM_001333593.1
NM_104217.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in negative gravitropism IEA
Inferred from Electronic Annotation
more info
  
involved_in response to red or far red light IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF641)
NP_001031180.1
  • Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT3G14870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001077711.1
  • Plant protein of unknown function (DUF641); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT3G14870.1); Has 313 Blast hits to 310 proteins in 37 species: Archae - 0; Bacteria - 16; Metazoa - 2; Fungi - 2; Plants - 281; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
NP_175744.1
  • Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT3G14870.1); Has 313 Blast hits to 310 proteins in 37 species: Archae - 0; Bacteria - 16; Metazoa - 2; Fungi - 2; Plants - 281; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19912990..19916686 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104217.5 → NP_175744.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175744.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
    Conserved Domains (1) summary
    pfam04859
    Location:62 → 187
    DUF641; Plant protein of unknown function (DUF641)

  2. NM_001333592.1 → NP_001320355.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
    Conserved Domains (1) summary
    pfam04859
    Location:62 → 187
    DUF641; Plant protein of unknown function (DUF641)

  3. NM_001084242.2 → NP_001077711.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077711.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
    Conserved Domains (1) summary
    pfam04859
    Location:62 → 187
    DUF641; Plant protein of unknown function (DUF641)

  4. NM_001333593.1 → NP_001320356.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
    Conserved Domains (1) summary
    pfam04859
    Location:62 → 187
    DUF641; Plant protein of unknown function (DUF641)

  5. NM_001036103.3 → NP_001031180.1  hypothetical protein (DUF641) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031180.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WN28, A0A384LFU7, Q0WSC7, Q9MAG4
    Conserved Domains (1) summary
    pfam04859
    Location:62 → 187
    DUF641; Plant protein of unknown function (DUF641)
Nucleotide Protein
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