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RBL5 RHOMBOID-like protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841690, updated on 18-Sep-2024

Summary

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Official Symbol
RBL5
Official Full Name
RHOMBOID-like protein 5
Primary source
TAIR:AT1G52580
Locus tag
AT1G52580
See related
Araport:AT1G52580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRBL5; F6D8.20; F6D8_20; RHOMBOID-like protein 5
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Genomic context

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See RBL5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (19587603..19589052)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family protein Neighboring gene phospholipase D alpha 2 Neighboring gene ncRNA Neighboring gene Putative thiol-disulfide oxidoreductase DCC Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene GRF zinc finger protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_104136.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RHOMBOID-like protein 5
NP_175667.1
  • RHOMBOID-like protein 5 (RBL5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1); Has 6054 Blast hits to 6053 proteins in 1760 species: Archae - 140; Bacteria - 3757; Metazoa - 520; Fungi - 179; Plants - 346; Viruses - 0; Other Eukaryotes - 1112 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19587603..19589052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104136.3 → NP_175667.1  RHOMBOID-like protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175667.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SSR0
    UniProtKB/TrEMBL
    A0A5S9WP15, A0A654EJJ7
    Conserved Domains (1) summary
    pfam01694
    Location:100 → 242
    Rhomboid; Rhomboid family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SSR0.1

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