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FRS6 FAR1-related sequence 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841683, updated on 18-Sep-2024

Summary

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Official Symbol
FRS6
Official Full Name
FAR1-related sequence 6
Primary source
TAIR:AT1G52520
Locus tag
AT1G52520
See related
Araport:AT1G52520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6D8.26; F6D8_26; FAR1-related sequence 6
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Genomic context

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See FRS6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (19565601..19568391)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MUTM homolog-1 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Hus1-like protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_104130.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
FAR1-related sequence 6
NP_175661.1
  • FAR1-related sequence 6 (FRS6); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 8 (TAIR:AT1G80010.1); Has 1626 Blast hits to 1478 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 91; Plants - 1518; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19565601..19568391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104130.4 → NP_175661.1  FAR1-related sequence 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175661.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SSQ4
    UniProtKB/TrEMBL
    A0A5S9WP43
    Conserved Domains (4) summary
    smart00575
    Location:597 → 622
    ZnF_PMZ; plant mutator transposase zinc finger
    PLN03097
    Location:8 → 692
    FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
    pfam03101
    Location:100 → 180
    FAR1; FAR1 DNA-binding domain
    pfam10551
    Location:302 → 392
    MULE; MULE transposase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SSQ4.1

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