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protein kinase family protein / C-type lectin domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841661, updated on 18-Sep-2024

Summary

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Official Full Name
protein kinase family protein / C-type lectin domain-containing protein
Primary source
TAIR:AT1G52310
Locus tag
AT1G52310
See related
Araport:AT1G52310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19K6.8; F19K6_8
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (19478066..19481154)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Zinc-binding ribosomal protein family protein Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene kinesin-like protein Neighboring gene Initiation factor eIF-4 gamma, MA3 Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001333533.1
NM_104110.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane receptor protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
protein kinase family protein / C-type lectin domain-containing protein
NP_175641.1
  • protein kinase family protein / C-type lectin domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C-type lectin (InterPro:IPR001304), Protein kinase, catalytic domain (InterPro:IPR000719), C-type lectin fold (InterPro:IPR016187), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), C-type lectin-like (InterPro:IPR016186); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G61860.1); Has 99398 Blast hits to 98054 proteins in 3684 species: Archae - 81; Bacteria - 11858; Metazoa - 37328; Fungi - 6469; Plants - 30414; Viruses - 265; Other Eukaryotes - 12983 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19478066..19481154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104110.3 → NP_175641.1  protein kinase family protein / C-type lectin domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175641.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56ZM6, Q9C823
    UniProtKB/TrEMBL
    A0A5S9WLL8, A0A654EJG8
    Conserved Domains (2) summary
    smart00034
    Location:50 → 187
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cl21453
    Location:280 → 545
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001333533.1 → NP_001321004.1  protein kinase family protein / C-type lectin domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W233, A0A1P8API8, A0A5S9WLL8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C823.1

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