U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Aquaporin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841648, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Aquaporin-like superfamily protein
Primary source
TAIR:AT1G52180
Locus tag
AT1G52180
See related
Araport:AT1G52180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9I5.3; F9I5_3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (19424944..19425928, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNAse Z3 Neighboring gene tRNA-Asn Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables channel activity IEA
Inferred from Electronic Annotation
more info
  
enables water channel activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Aquaporin-like superfamily protein
NP_175629.1
  • Aquaporin-like superfamily protein; FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: delta tonoplast integral protein (TAIR:AT3G16240.1); Has 2411 Blast hits to 2411 proteins in 517 species: Archae - 9; Bacteria - 631; Metazoa - 574; Fungi - 56; Plants - 1081; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19424944..19425928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104098.1 → NP_175629.1  Aquaporin-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175629.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DX90, Q9M818
    Conserved Domains (1) summary
    cl00200
    Location:29 → 122
    MIP; Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools