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DEA(D/H)-box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841562, updated on 18-Sep-2024

Summary

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Official Full Name
DEA(D/H)-box RNA helicase family protein
Primary source
TAIR:AT1G51380
Locus tag
AT1G51380
See related
Araport:AT1G51380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11M15.24; F11M15_24
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (19047672..19050214)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene dimeric A/B barrel domainS-protein 1 Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene NFU domain protein 5 Neighboring gene ncRNA Neighboring gene Photosystem II 5 kD protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001333485.1
NM_001333486.1
NM_104016.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DEA(D/H)-box RNA helicase family protein
NP_175549.1
  • DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1); Has 43039 Blast hits to 42379 proteins in 3015 species: Archae - 601; Bacteria - 21889; Metazoa - 6256; Fungi - 4531; Plants - 2596; Viruses - 24; Other Eukaryotes - 7142 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19047672..19050214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333484.1 → NP_001322293.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WL14, A0A1P8ATK7

  2. NM_104016.3 → NP_175549.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175549.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C8J1, Q9SYE0
    UniProtKB/TrEMBL
    A0A5S9WNS4, A0A654EMI8
    Conserved Domains (1) summary
    PTZ00424
    Location:21 → 391
    PTZ00424; helicase 45; Provisional

  3. NM_001333485.1 → NP_001322292.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATN0

  4. NM_001333486.1 → NP_001322294.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATJ6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C8J1.2

Gene LinkOut

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