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vesicle-associated protein 1-4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841550, updated on 18-Sep-2024

Summary

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Official Full Name
vesicle-associated protein 1-4
Primary source
TAIR:AT1G51270
Locus tag
AT1G51270
See related
Araport:AT1G51270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11M15.13; F11M15_13
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (19007364..19011285)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene lysophosphatidyl acyltransferase 3 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084226.4
NM_001160946.2
NM_001333466.1
NM_001333467.1
NM_001333468.1
NM_001333469.1
NM_001333470.1
NM_001333471.1
NM_001333472.1
NM_001333473.1
NM_001333475.1
NM_001333476.1
NM_001333477.1
NM_104005.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables NAD+ nucleotidase, cyclic ADP-ribose generating IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vesicle-associated protein 1-4
NP_001154418.1
  • structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1); Has 3496 Blast hits to 2597 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 611; Fungi - 254; Plants - 2516; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
NP_001319192.1
  • structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1); Has 3496 Blast hits to 2596 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 611; Fungi - 254; Plants - 2515; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
NP_001319193.1
  • structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1).
NP_175538.3
  • structural molecules;transmembrane receptors;structural molecules; FUNCTIONS IN: transmembrane receptor activity, structural molecule activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 2812 Blast hits to 2401 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 192; Plants - 2224; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19007364..19011285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333474.1 → NP_001321264.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WB36, A0A1P8AQE6, Q56Y44

  2. NM_001160946.2 → NP_001154418.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154418.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ET77, F4I818
    Conserved Domains (2) summary
    smart00255
    Location:357 → 492
    TIR; Toll - interleukin 1 - resistance
    pfam00635
    Location:176 → 283
    Motile_Sperm; MSP (Major sperm protein) domain

  3. NM_001333475.1 → NP_001321257.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQB2, A0A654ET77

  4. NM_001333476.1 → NP_001321265.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQB2, A0A654ET77

  5. NM_001333472.1 → NP_001319192.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ET77, F4I820

  6. NM_001084226.4 → NP_001077695.4  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077695.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ET77, F4I820
    Conserved Domains (2) summary
    smart00255
    Location:357 → 492
    TIR; Toll - interleukin 1 - resistance
    pfam00635
    Location:176 → 283
    Motile_Sperm; MSP (Major sperm protein) domain

  7. NM_104005.3 → NP_175538.3  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175538.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SYC9
    UniProtKB/TrEMBL
    A0A654ET77
    Conserved Domains (2) summary
    smart00255
    Location:357 → 492
    TIR; Toll - interleukin 1 - resistance
    pfam00635
    Location:176 → 283
    Motile_Sperm; MSP (Major sperm protein) domain

  8. NM_001333477.1 → NP_001321256.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQB2, A0A654ET77

  9. NM_001333466.1 → NP_001321262.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQB2, A0A654ET77

  10. NM_001333470.1 → NP_001321259.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W9E7, A0A178WB36, A0A1P8AQB3, A0A384KL39, Q56Y44

  11. NM_001333469.1 → NP_001321260.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W9E7, A0A178WB36, A0A1P8AQB3, A0A384KL39, Q56Y44

  12. NM_001333467.1 → NP_001321261.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W9E7, A0A178WB36, A0A1P8AQB3, A0A384KL39, Q56Y44

  13. NM_001333468.1 → NP_001321263.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W9E7, A0A178WB36, A0A1P8AQB3, A0A384KL39, Q56Y44

  14. NM_001333471.1 → NP_001321258.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQC1

  15. NM_001333473.1 → NP_001319193.1  vesicle-associated protein 1-4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I819
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SYC9.1

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