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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841495, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G50730
Locus tag
AT1G50730
See related
Araport:AT1G50730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4M15.4; F4M15_4
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Genomic context

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Location:
chromosome: 1
Exon count:
23
Sequence:
Chromosome: 1; NC_003070.9 (18795210..18802370)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Stigma-specific Stig1 family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_103955.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in endocytic recycling IEA
Inferred from Electronic Annotation
more info
  
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of retromer, cargo-selective complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_175488.2
  • unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18795210..18802370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333452.1 → NP_001322367.1  uncharacterized protein AT1G50730 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATS8, A0A5S9WL50
    Conserved Domains (1) summary
    pfam03635
    Location:463 → 718
    Vps35; Vacuolar protein sorting-associated protein 35

  2. NM_001333453.1 → NP_001322366.1  uncharacterized protein AT1G50730 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATR6, A0A5S9WL50

  3. NM_103955.2 → NP_175488.2  uncharacterized protein AT1G50730 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175488.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WL50, F4I6L0
    Conserved Domains (1) summary
    pfam03635
    Location:478 → 717
    Vps35; Vacuolar protein sorting-associated protein 35
Nucleotide Protein
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