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Stigma-specific Stig1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841494, updated on 18-Sep-2024

Summary

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Official Full Name
Stigma-specific Stig1 family protein
Primary source
TAIR:AT1G50720
Locus tag
AT1G50720
See related
Araport:AT1G50720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17J6.24; F17J6_24
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (18789127..18789687, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene calcium-dependent protein kinase 33 Neighboring gene HAUS augmin-like complex subunit Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Stigma-specific Stig1 family protein
NP_175487.1
  • Stigma-specific Stig1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: Stigma-specific Stig1 family protein (TAIR:AT5G55110.1); Has 305 Blast hits to 197 proteins in 35 species: Archae - 0; Bacteria - 106; Metazoa - 1; Fungi - 34; Plants - 157; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18789127..18789687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103954.2 → NP_175487.1  Stigma-specific Stig1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175487.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C6P1, Q9C6T5
    UniProtKB/TrEMBL
    A0A5S9WKP5
    Conserved Domains (1) summary
    pfam04885
    Location:16 → 154
    Stig1; Stigma-specific protein, Stig1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C6T5.1

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