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OTU-like cysteine protease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841489, updated on 18-Sep-2024

Summary

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Official Full Name
OTU-like cysteine protease family protein
Primary source
TAIR:AT1G50670
Locus tag
AT1G50670
See related
Araport:AT1G50670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17J6.19; F17J6_19; OTU2; ovarian tumor domain (OTU)-containing DUB (deubiquitilating enzyme) 2
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (18774805..18777030, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene actin cytoskeleton-regulatory complex pan-like protein Neighboring gene ncRNA Neighboring gene AP2/B3 transcription factor family protein Neighboring gene Cystatin/monellin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001333447.1
NM_001333448.1
NM_103949.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
OTU-like cysteine protease family protein
NP_175482.1
  • OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); Has 406 Blast hits to 406 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 136; Plants - 63; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18774805..18777030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103949.4 → NP_175482.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175482.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178W4L6, Q9LPT6
    UniProtKB/TrEMBL
    A0A384LJN6, A0A5S9WNL1
    Conserved Domains (1) summary
    COG5539
    Location:13 → 207
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

  2. NM_001333447.1 → NP_001321194.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178W4L6, Q9LPT6
    UniProtKB/TrEMBL
    A0A384LJN6, A0A5S9WNL1
    Conserved Domains (1) summary
    COG5539
    Location:13 → 207
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

  3. NM_001333448.1 → NP_001321195.1  OTU-like cysteine protease family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178W4L6, Q9LPT6
    UniProtKB/TrEMBL
    A0A384LJN6, A0A5S9WNL1
    Conserved Domains (1) summary
    COG5539
    Location:13 → 207
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LPT6.1

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