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Stigma-specific Stig1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841487, updated on 18-Sep-2024

Summary

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Official Full Name
Stigma-specific Stig1 family protein
Primary source
TAIR:AT1G50650
Locus tag
AT1G50650
See related
Araport:AT1G50650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11F12.3; F11F12_3
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (18763640..18764367, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ethylene responsive element binding factor 3 Neighboring gene ncRNA Neighboring gene actin cytoskeleton-regulatory complex pan-like protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ZHOUPI and KERBEROS Mediate Embryo/Endosperm Separation by Promoting the Formation of an Extracuticular Sheath at the Embryo Surface. Moussu S, et al. Plant Cell, 2017 Jul. PMID 28696222, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AT1G50650 (KRS) role in the eplant embryo/endosperm separation and the formation of the extracuticular sheath at the seed surface
    Title: ZHOUPI and KERBEROS Mediate Embryo/Endosperm Separation by Promoting the Formation of an Extracuticular Sheath at the Embryo Surface.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cutin-based cuticle development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within seed development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Stigma-specific Stig1 family protein
NP_175480.1
  • Stigma-specific Stig1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: Stigma-specific Stig1 family protein (TAIR:AT1G50720.1); Has 352 Blast hits to 217 proteins in 35 species: Archae - 0; Bacteria - 144; Metazoa - 3; Fungi - 38; Plants - 161; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18763640..18764367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103947.2 → NP_175480.1  Stigma-specific Stig1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175480.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C6P6, Q9LPT4
    UniProtKB/TrEMBL
    A0A178W893, A0A5S9WNA5
    Conserved Domains (1) summary
    pfam04885
    Location:33 → 138
    Stig1; Stigma-specific protein, Stig1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C6P6.1

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