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RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841484, updated on 18-Sep-2024

Summary

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Official Full Name
RING/FYVE/PHD zinc finger superfamily protein
Primary source
TAIR:AT1G50620
Locus tag
AT1G50620
See related
Araport:AT1G50620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17J6.14; F17J6_14
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (18748241..18751338)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene scarecrow-like 5 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene extracellular ligand-gated ion channel protein (DUF3537) Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_103944.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/FYVE/PHD zinc finger superfamily protein
NP_175477.1
  • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G20280.1); Has 3714 Blast hits to 3101 proteins in 414 species: Archae - 4; Bacteria - 443; Metazoa - 1736; Fungi - 538; Plants - 319; Viruses - 13; Other Eukaryotes - 661 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18748241..18751338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103944.3 → NP_175477.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175477.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EIZ8, A0A7G2E1U9, Q9C6P8
    Conserved Domains (2) summary
    PRK13108
    Location:464 → 626
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15489
    Location:323 → 370
    PHD_SF; PHD finger superfamily
Nucleotide Protein
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