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Saccharopine dehydrogenase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841467, updated on 18-Sep-2024

Summary

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Official Full Name
Saccharopine dehydrogenase
Primary source
TAIR:AT1G50450
Locus tag
AT1G50450
See related
Araport:AT1G50450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11F12.19; F11F12_19
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (18687785..18690503, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ergosterol biosynthesis ERG4/ERG24 family Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hexokinase-like 1 Neighboring gene F-box associated ubiquitination effector family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_103928.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
Saccharopine dehydrogenase
NP_564570.1
  • Saccharopine dehydrogenase; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase / Homospermidine synthase (InterPro:IPR005097), NAD(P)-binding domain (InterPro:IPR016040); Has 1549 Blast hits to 1547 proteins in 500 species: Archae - 22; Bacteria - 980; Metazoa - 33; Fungi - 88; Plants - 49; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18687785..18690503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103928.4 → NP_564570.1  Saccharopine dehydrogenase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564570.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6N9, A0A7G2E305, Q94BZ0
    Conserved Domains (1) summary
    COG1748
    Location:40 → 416
    Lys9; Saccharopine dehydrogenase, NADP-dependent [Amino acid transport and metabolism]
Nucleotide Protein
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