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SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841463, updated on 18-Sep-2024

Summary

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Official Full Name
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
Primary source
TAIR:AT1G50410
Locus tag
AT1G50410
See related
Araport:AT1G50410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CHR28; chromatin remodeling 28; F11F12.23; F11F12_23; FRG2; SNF2-RING-HELICASE?LIKE 2
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (18672132..18677652)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene Eukaryotic porin family protein Neighboring gene scarecrow-like 3 Neighboring gene Ergosterol biosynthesis ERG4/ERG24 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation. Groth M, et al. Proc Natl Acad Sci U S A, 2014 Dec 9. PMID 25425661, Free PMC Article
  2. SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis. Han YF, et al. Cell Res, 2014 Dec. PMID 25420628, Free PMC Article
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_103924.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in gene silencing by siRNA-directed DNA methylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
NP_564568.1
  • SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT3G20010.1); Has 25748 Blast hits to 15874 proteins in 1868 species: Archae - 87; Bacteria - 8136; Metazoa - 6127; Fungi - 5385; Plants - 2378; Viruses - 150; Other Eukaryotes - 3485 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18672132..18677652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333433.1 → NP_001323325.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94BR5, Q9LPR7, Q9SX56
    UniProtKB/TrEMBL
    A0A654EMA9, A0A7G2E168
    Conserved Domains (4) summary
    COG0553
    Location:178 → 979
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00162
    Location:679 → 719
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cd18008
    Location:226 → 564
    DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
    cl17238
    Location:678 → 723
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. NM_001333434.1 → NP_001323326.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94BR5, Q9LPR7, Q9SX56
    UniProtKB/TrEMBL
    A0A654EMA9, A0A7G2E168
    Conserved Domains (4) summary
    COG0553
    Location:178 → 979
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00162
    Location:679 → 719
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cd18008
    Location:226 → 564
    DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
    cl17238
    Location:678 → 723
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. NM_001333435.1 → NP_001323324.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIV7, A0A1P8AWQ0

  4. NM_103924.2 → NP_564568.1  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564568.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94BR5, Q9LPR7, Q9SX56
    UniProtKB/TrEMBL
    A0A654EMA9, A0A7G2E168
    Conserved Domains (4) summary
    COG0553
    Location:178 → 979
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00162
    Location:679 → 719
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cd18008
    Location:226 → 564
    DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
    cl17238
    Location:678 → 723
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94BR5.1

Gene LinkOut

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