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Prolyl oligopeptidase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841460, updated on 18-Sep-2024

Summary

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Official Full Name
Prolyl oligopeptidase family protein
Primary source
TAIR:AT1G50380
Locus tag
AT1G50380
See related
Araport:AT1G50380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14I3.4; F14I3_4
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (18662266..18666515)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene Eukaryotic porin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_103921.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
Prolyl oligopeptidase family protein
NP_564567.1
  • Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 7641 Blast hits to 7556 proteins in 1214 species: Archae - 80; Bacteria - 3203; Metazoa - 306; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 3813 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18662266..18666515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333432.1 → NP_001322305.1  Prolyl oligopeptidase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WF37, A0A1P8ATN7
    Conserved Domains (1) summary
    COG1770
    Location:71 → 770
    PtrB; Protease II [Amino acid transport and metabolism]

  2. NM_103921.3 → NP_564567.1  Prolyl oligopeptidase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564567.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WF37, A0A7G2DZN8, Q9SX53
    Conserved Domains (1) summary
    COG1770
    Location:5 → 704
    PtrB; Protease II [Amino acid transport and metabolism]
Nucleotide Protein
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