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immunoglobulin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841434, updated on 18-Sep-2024

Summary

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Official Full Name
immunoglobulin
Primary source
TAIR:AT1G50120
Locus tag
AT1G50120
See related
Araport:AT1G50120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2J10.3; F2J10_3
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (18561728..18566269)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Leu Neighboring gene D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein Neighboring gene miscRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Golgi-localized LOT regulates trans-Golgi network biogenesis and pollen tube growth. Jia PF, et al. Proc Natl Acad Sci U S A, 2018 Nov 27. PMID 30413616, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001333420.1
NM_103898.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within retrograde transport, endosome to Golgi IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with Golgi cisterna IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
colocalizes_with pollen tube IDA
Inferred from Direct Assay
more info
 PubMed 
located_in trans-Golgi network IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
immunoglobulin
NP_175432.2
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18561728..18566269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103898.5 → NP_175432.2  immunoglobulin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175432.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEH6, Q8RWU2
    Conserved Domains (1) summary
    pfam08737
    Location:355 → 475
    Rgp1; Rgp1

  2. NM_001333420.1 → NP_001322050.1  immunoglobulin [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEH6, A0A1P8ASX9
Nucleotide Protein
Heading Accession and Version

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