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DNA/RNA polymerases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841422, updated on 18-Sep-2024

Summary

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Official Full Name
DNA/RNA polymerases superfamily protein
Primary source
TAIR:AT1G49980
Locus tag
AT1G49980
See related
Araport:AT1G49980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2J10.13; F2J10_13
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (18507922..18513340)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Xanthine/uracil permease family protein Neighboring gene CLP protease proteolytic subunit 1 Neighboring gene photosystem I reaction center subunit N Neighboring gene F-box family protein Neighboring gene methyltransferase Neighboring gene ncRNA Neighboring gene tubulin alpha-2 chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The noncatalytic C-terminus of AtPOLK Y-family DNA polymerase affects synthesis fidelity, mismatch extension and translesion replication. García-Ortiz MV, et al. FEBS J, 2007 Jul. PMID 17550419
  2. Arabidopsis thaliana AtPOLK encodes a DinB-like DNA polymerase that extends mispaired primer termini and is highly expressed in a variety of tissues. García-Ortiz MV, et al. Plant J, 2004 Jul. PMID 15200644
  3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001333411.1
NM_001333412.1
NM_001333413.1
NM_001333414.1
NM_103886.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-directed DNA polymerase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-directed DNA polymerase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables single-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA/RNA polymerases superfamily protein
NP_175420.3
  • DNA/RNA polymerases superfamily protein; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 10430 Blast hits to 10220 proteins in 2419 species: Archae - 210; Bacteria - 6752; Metazoa - 626; Fungi - 433; Plants - 141; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18507922..18513340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333407.1 → NP_001320648.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEC9, A0A1P8ANG9

  2. NM_001333408.1 → NP_001320649.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEC9, A0A1P8ANG9

  3. NM_001333409.1 → NP_001320646.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEC9

  4. NM_001333410.1 → NP_001320647.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEC9

  5. NM_103886.4 → NP_175420.3  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175420.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1P8ANH5, Q56YN7, Q6JDV7, Q9LPM1
    UniProtKB/TrEMBL
    A0A178WEC9
    Conserved Domains (1) summary
    cd03586
    Location:106 → 438
    PolY_Pol_IV_kappa; DNA Polymerase IV/Kappa

  6. NM_001333411.1 → NP_001320645.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANG2

  7. NM_001333412.1 → NP_001320644.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEC9

  8. NM_001333413.1 → NP_001320650.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEC9

  9. NM_001333414.1 → NP_001320651.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANJ3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6JDV7.1

Gene LinkOut

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