U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pfkB-like carbohydrate kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841358, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
pfkB-like carbohydrate kinase family protein
Primary source
TAIR:AT1G49350
Locus tag
AT1G49350
See related
Araport:AT1G49350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13F21.22; F13F21_22
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (18264944..18267270)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Phosphatidylinositol 3- and 4-kinase family protein Neighboring gene ncRNA Neighboring gene F-box family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Structural basis for the substrate specificity and catalytic features of pseudouridine kinase from Arabidopsis thaliana. Kim SH, et al. Nucleic Acids Res, 2021 Jan 11. PMID 33290549, Free PMC Article
  2. A Kinase and a Glycosylase Catabolize Pseudouridine in the Peroxisome to Prevent Toxic Pseudouridine Monophosphate Accumulation. Chen M, et al. Plant Cell, 2020 Mar. PMID 31907295, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_103825.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pseudouridine kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in pyrimidine ribonucleoside metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pfkB-like carbohydrate kinase family protein
NP_564543.1
  • pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); Has 2896 Blast hits to 2893 proteins in 1061 species: Archae - 1; Bacteria - 2475; Metazoa - 103; Fungi - 59; Plants - 64; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18264944..18267270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103825.6 → NP_564543.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564543.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFL6, Q94AT3, Q9XIA1
    UniProtKB/TrEMBL
    A0A5S9WND9
    Conserved Domains (1) summary
    cd01941
    Location:2 → 344
    YeiC_kinase_like; YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94AT3.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools