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RR19 response regulator 19 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841342, updated on 18-Sep-2024

Summary

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Official Symbol
RR19
Official Full Name
response regulator 19
Primary source
TAIR:AT1G49190
Locus tag
AT1G49190
See related
Araport:AT1G49190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARR19; F27J15.4; F27J15_4; response regulator 19
Summary
member of Response Regulator: B- Type
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Genomic context

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See RR19 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (18191267..18193782)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene protein kinase family protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Type-B response regulators display overlapping expression patterns in Arabidopsis. Mason MG, et al. Plant Physiol, 2004 Jun. PMID 15173562, Free PMC Article
  2. Two-component signal transduction pathways in Arabidopsis. Hwang I, et al. Plant Physiol, 2002 Jun. PMID 12068096, Free PMC Article
  3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables phosphorelay response regulator activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cytokinin-activated signaling pathway TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
response regulator 19
NP_001185179.1
  • response regulator 19 (RR19); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: response regulator 20 (TAIR:AT3G62670.1).
NP_001319180.1
  • response regulator 19 (RR19); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 20 (TAIR:AT3G62670.1); Has 45111 Blast hits to 44660 proteins in 2702 species: Archae - 154; Bacteria - 38880; Metazoa - 15; Fungi - 96; Plants - 2828; Viruses - 0; Other Eukaryotes - 3138 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18191267..18193782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198250.1 → NP_001185179.1  response regulator 19 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185179.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZW3
    Conserved Domains (2) summary
    TIGR01557
    Location:420 → 474
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    cd00156
    Location:37 → 149
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

  2. NM_001333372.1 → NP_001319180.1  response regulator 19 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I1N9, F4I1P0, Q9M9B9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M9B9.2

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