U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

YUC10 Flavin-containing monooxygenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841313, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
YUC10
Official Full Name
Flavin-containing monooxygenase family protein
Primary source
TAIR:AT1G48910
Locus tag
AT1G48910
See related
Araport:AT1G48910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F27K7.7; F27K7_7; YUCCA 10
Summary
A paternally expressed imprinted gene.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See YUC10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (18091681..18093878)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 7 Neighboring gene pseudo Neighboring gene Signal recognition particle, SRP54 subunit protein Neighboring gene uncharacterized protein Neighboring gene nucleolin like 1 Neighboring gene glycosyl hydrolase 9C1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes. Yang L, et al. Virology, 2020 Jul. PMID 32452413
  2. Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. Cheng Y, et al. Plant Cell, 2007 Aug. PMID 17704214, Free PMC Article
  3. Activation-tagged suppressors of a weak brassinosteroid receptor mutant. Kang B, et al. Mol Plant, 2010 Jan. PMID 19995721, Free PMC Article
  4. An Improved Recombineering Toolset for Plants. Brumos J, et al. Plant Cell, 2020 Jan. PMID 31666295, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes.
    Title: The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
  
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables indole-3-pyruvate monooxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in auxin biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of anatomical structure morphogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to ethylene IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Flavin-containing monooxygenase family protein
NP_175321.1
  • YUC10; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: regulation of anatomical structure morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G21430.1); Has 10747 Blast hits to 10734 proteins in 1402 species: Archae - 41; Bacteria - 5770; Metazoa - 759; Fungi - 1564; Plants - 638; Viruses - 0; Other Eukaryotes - 1975 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18091681..18093878
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103784.2 → NP_175321.1  Flavin-containing monooxygenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175321.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FVQ0
    UniProtKB/TrEMBL
    A0A5S9WMV0
    Conserved Domains (2) summary
    COG2072
    Location:5 → 350
    CzcO; Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism]
    cl21454
    Location:6 → 184
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FVQ0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.