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Signal recognition particle, SRP54 subunit protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841312, updated on 7-Oct-2024

Summary

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Official Full Name
Signal recognition particle, SRP54 subunit protein
Primary source
TAIR:AT1G48900
Locus tag
AT1G48900
See related
Araport:AT1G48900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F27K7.8; F27K7_8
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (18084715..18087934, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene TRICHOME BIREFRINGENCE-LIKE 7 Neighboring gene pseudo Neighboring gene Flavin-containing monooxygenase family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The role of chloroplast SRP54 domains and its C-terminal tail region in post- and co-translational protein transport in vivo. Bischoff A, et al. J Exp Bot, 2024 Sep 27. PMID 38989593, Free PMC Article
  2. Ribosome-Associated Chloroplast SRP54 Enables Efficient Cotranslational Membrane Insertion of Key Photosynthetic Proteins. Hristou A, et al. Plant Cell, 2019 Nov. PMID 31444312, Free PMC Article
  3. Chloroplast SRP54 Was Recruited for Posttranslational Protein Transport via Complex Formation with Chloroplast SRP43 during Land Plant Evolution. Dünschede B, et al. J Biol Chem, 2015 May 22. PMID 25833951, Free PMC Article
  4. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The role of chloroplast SRP54 domains and its C-terminal tail region in post- and co-translational protein transport in vivo.
    Title: The role of chloroplast SRP54 domains and its C-terminal tail region in post- and co-translational protein transport in vivo.
  2. chloroplast signal recognition particle subunit (cpSRP54) is required for efficient cotranslational targeting of several central photosynthetic proteins, such as the PSII PsbA (D1) subunit, in Arabidopsis (Arabidopsis thaliana).
    Title: Ribosome-Associated Chloroplast SRP54 Enables Efficient Cotranslational Membrane Insertion of Key Photosynthetic Proteins.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084221.1
NM_103783.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Signal recognition particle, SRP54 subunit protein
NP_001077690.1
  • Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit (TAIR:AT1G15310.1); Has 17287 Blast hits to 17282 proteins in 2918 species: Archae - 472; Bacteria - 10591; Metazoa - 363; Fungi - 288; Plants - 279; Viruses - 1; Other Eukaryotes - 5293 (source: NCBI BLink).
NP_564535.1
  • Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT5G49500.1); Has 17579 Blast hits to 17572 proteins in 2934 species: Archae - 472; Bacteria - 10667; Metazoa - 363; Fungi - 296; Plants - 287; Viruses - 1; Other Eukaryotes - 5493 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    18084715..18087934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103783.2 → NP_564535.1  Signal recognition particle, SRP54 subunit protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564535.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P49967, Q93W49, Q9FVP9
    UniProtKB/TrEMBL
    A0A178WMZ2, A0A5S9WN31, A0A7G2E2W7
    Conserved Domains (1) summary
    TIGR01425
    Location:2 → 428
    SRP54_euk; signal recognition particle protein SRP54

  2. NM_001084221.1 → NP_001077690.1  Signal recognition particle, SRP54 subunit protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077690.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MSA9, C0Z2C1
    Conserved Domains (4) summary
    TIGR01425
    Location:2 → 418
    SRP54_euk; signal recognition particle protein SRP54
    pfam00448
    Location:102 → 294
    SRP54; SRP54-type protein, GTPase domain
    pfam02881
    Location:6 → 83
    SRP54_N; SRP54-type protein, helical bundle domain
    pfam02978
    Location:327 → 417
    SRP_SPB; Signal peptide binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49967.2

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