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EMB3105 Ribosomal L18p/L5e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841255, updated on 18-Sep-2024

Summary

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Official Symbol
EMB3105
Official Full Name
Ribosomal L18p/L5e family protein
Primary source
TAIR:AT1G48350
Locus tag
AT1G48350
See related
Araport:AT1G48350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 3105; F11A17.10; F11A17_10
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Genomic context

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See EMB3105 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (17867102..17868432)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SsrA-binding protein Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene zinc ion binding/nucleic acid binding/hydrolase Neighboring gene YELLOW STRIPE like 8 Neighboring gene root hair initiation protein root hairless 1 (RHL1)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_103731.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
Ribosomal L18p/L5e family protein
NP_175268.1
  • Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484), Ribosomal protein L18, bacterial (InterPro:IPR004389); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G14205.1); Has 7344 Blast hits to 7344 proteins in 2490 species: Archae - 0; Bacteria - 5225; Metazoa - 1; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 2003 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    17867102..17868432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103731.6 → NP_175268.1  Ribosomal L18p/L5e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175268.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SX68
    UniProtKB/TrEMBL
    A0A178WDT1, A0A384KQD1, Q0WWC5
    Conserved Domains (1) summary
    PRK05593
    Location:51 → 170
    rplR; 50S ribosomal protein L18; Reviewed
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SX68.1

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