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hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841248, updated on 18-Sep-2024

Summary

Official Full Name
hydroxyproline-rich glycoprotein family protein
Primary source
TAIR:AT1G48280
Locus tag
AT1G48280
See related
Araport:AT1G48280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11A17.16; F11A17_16
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Genomic context

Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (17835032..17837781)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene G-protein-coupled receptor 1 Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene GRF zinc finger protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_103725.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables microtubule binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 
located_in cortical microtubule IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
hydroxyproline-rich glycoprotein family protein
NP_564524.1
  • hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 10788 Blast hits to 7587 proteins in 614 species: Archae - 16; Bacteria - 992; Metazoa - 4057; Fungi - 1231; Plants - 2229; Viruses - 567; Other Eukaryotes - 1696 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    17835032..17837781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103725.3NP_564524.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564524.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93ZL7, Q9SX62
    UniProtKB/TrEMBL
    A0A5S9WK16