NPSN12 Putative plant snare 12 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: NPSN12
Official Full Name: Putative plant snare 12
Primary source: TAIR:AT1G48240
Locus tag: AT1G48240
See related: Araport:AT1G48240
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATNPSN12; F21D18.4; novel plant snare 12
Summary: member of NPSN Gene Family
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Genomic context

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See NPSN12 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 10

Sequence:: Chromosome: 1; NC_003070.9 (17808988..17812106, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

MASC_STS13103 (e-PCR)
- UniSTS:258600

Homology

Orthologs from OrthoDB

NM_001333315.1

Supported by ESTs:

NM_103721.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables SNAP receptor activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of SNARE complex	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plasma membrane	HDA more info	PubMed
located_in plasmodesma	HDA more info	PubMed

General protein information

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Preferred Names: Putative plant snare 12

NP_175258.2

novel plant snare 12 (NPSN12); FUNCTIONS IN: protein transporter activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 462 Blast hits to 462 proteins in 143 species: Archae - 6; Bacteria - 52; Metazoa - 98; Fungi - 25; Plants - 137; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

17808988..17812106 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_103721.5 → NP_175258.2 Putative plant snare 12 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_175258.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9LNH6, Q9SX59

UniProtKB/TrEMBL

A0A178WLK0, A0A384L1Z9, A0A7G2ELJ3, Q541Y4

Conserved Domains (1) summary

cd15861
Location:145 → 207

SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9
NM_001333315.1 → NP_001323414.1 Putative plant snare 12 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AX23