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methyltransferase, putative (DUF21) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841136, updated on 18-Sep-2024

Summary

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Official Full Name
methyltransferase, putative (DUF21)
Primary source
TAIR:AT1G47330
Locus tag
AT1G47330
See related
Araport:AT1G47330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T3F24.6; T3F24_6
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (17351018..17353875)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_103627.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in magnesium ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
methyltransferase, putative (DUF21)
NP_175166.2
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 11150 Blast hits to 10836 proteins in 2494 species: Archae - 102; Bacteria - 8237; Metazoa - 428; Fungi - 268; Plants - 237; Viruses - 0; Other Eukaryotes - 1878 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    17351018..17353875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333270.1 → NP_001321268.1  methyltransferase, putative (DUF21) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQD0, A0A7G2DZH2

  2. NM_103627.5 → NP_175166.2  methyltransferase, putative (DUF21) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175166.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RY60, Q9FX04
    UniProtKB/TrEMBL
    A0A5S9WK91, A0A654EHZ2, A0A7G2DZH2
    Conserved Domains (2) summary
    COG1253
    Location:14 → 311
    TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]
    pfam05109
    Location:462 → 518
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RY60.1

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