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ATUBC2-1 Ubiquitin-conjugating enzyme family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841072, updated on 18-Sep-2024

Summary

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Official Symbol
ATUBC2-1
Official Full Name
Ubiquitin-conjugating enzyme family protein
Primary source
TAIR:AT1G45050
Locus tag
AT1G45050
See related
Araport:AT1G45050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Arabidopsis thaliana ubiquitin-conjugating enzyme 15; F27F5.13; F27F5_13; UBC15
Summary
member of ubiquitin-conjugating E2-proteins
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Genomic context

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See ATUBC2-1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (17031211..17033269)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene copper ion binding / electron carrier protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional expression and molecular characterization of AtUBC2-1, a novel ubiquitin-conjugating enzyme (E2) from Arabidopsis thaliana. Bartling D, et al. Plant Mol Biol, 1993 Oct. PMID 8219072
  2. The CUL3A-LFH1-UBC15 ubiquitin ligase complex mediates SHORT VEGETATIVE PHASE degradation to accelerate flowering at high ambient temperature. Jin S, et al. Plant Commun, 2024 Apr 8. PMID 38213026, Free PMC Article
  3. The E2 ubiquitin-conjugating enzymes, AtUBC1 and AtUBC2, play redundant roles and are involved in activation of FLC expression and repression of flowering in Arabidopsis thaliana. Xu L, et al. Plant J, 2009 Jan. PMID 18798874
  4. The Arabidopsis Iron-Sulfur Protein GRXS17 is a Target of the Ubiquitin E3 Ligases RGLG3 and RGLG4. Nagels Durand A, et al. Plant Cell Physiol, 2016 Sep. PMID 27497447
  5. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Kraft E, et al. Plant Physiol, 2005 Dec. PMID 16339806, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The CUL3A-LFH1-UBC15 ubiquitin ligase complex mediates SHORT VEGETATIVE PHASE degradation to accelerate flowering at high ambient temperature.
    Title: The CUL3A-LFH1-UBC15 ubiquitin ligase complex mediates SHORT VEGETATIVE PHASE degradation to accelerate flowering at high ambient temperature.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001333242.1
NM_103582.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within leaf morphogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within negative regulation of flower development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ubiquitin-conjugating enzyme family protein
NP_564493.1
  • ATUBC2-1; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 18 (TAIR:AT5G42990.1); Has 9046 Blast hits to 9044 proteins in 385 species: Archae - 0; Bacteria - 0; Metazoa - 3956; Fungi - 2002; Plants - 1701; Viruses - 20; Other Eukaryotes - 1367 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    17031211..17033269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103582.4 → NP_564493.1  Ubiquitin-conjugating enzyme family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564493.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48952, P42743, Q67XR1, Q9MAK4
    UniProtKB/TrEMBL
    A0A178W5P1, A0A5S9WMA5
    Conserved Domains (1) summary
    pfam00179
    Location:19 → 158
    UQ_con; Ubiquitin-conjugating enzyme

  2. NM_001333242.1 → NP_001323221.1  Ubiquitin-conjugating enzyme family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWD8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42743.2

Gene LinkOut

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