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Sphingomyelin synthetase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840942, updated on 18-Sep-2024

Summary

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Official Full Name
Sphingomyelin synthetase family protein
Primary source
TAIR:AT1G43580
Locus tag
AT1G43580
See related
Araport:AT1G43580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10P12.6; T10P12_6
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (16410372..16412736, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_103483.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphotransferase activity, for other substituted phosphate groups IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Sphingomyelin synthetase family protein
NP_564484.1
  • Sphingomyelin synthetase family protein; Has 50 Blast hits to 47 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16410372..16412736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103483.3 → NP_564484.1  Sphingomyelin synthetase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564484.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z2F1, Q56YW4, Q8LD82, Q9XIG2
    UniProtKB/TrEMBL
    A0A654EHG8, A0A7G2E1T9
    Conserved Domains (1) summary
    cl00474
    Location:269 → 334
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XIG2.1

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