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LCV2 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840912, updated on 18-Sep-2024

Summary

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Official Symbol
LCV2
Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G43130
Locus tag
AT1G43130
See related
Araport:AT1G43130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1I21.3; F1I21_3; like COV 2
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Genomic context

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See LCV2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (16228189..16231254, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene Cullin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation of COV1, a gene involved in the regulation of vascular patterning in the stem of Arabidopsis. Parker G, et al. Development, 2003 May. PMID 12668628
  2. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
  3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001333208.1
NM_001333209.1
NM_103466.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within stem vascular tissue pattern formation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in endosome HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein
NP_001321430.1
  • like COV 2
NP_001321431.1
  • like COV 2
NP_564483.1
  • like COV 2 (LCV2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF502) (TAIR:AT2G20120.1); Has 2432 Blast hits to 2432 proteins in 576 species: Archae - 20; Bacteria - 1089; Metazoa - 1; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16228189..16231254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103466.5 → NP_564483.1  uncharacterized protein AT1G43130 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564483.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCZ6, Q9C8C1
    UniProtKB/TrEMBL
    A0A178WDP4, A0A5S9WMA9
    Conserved Domains (1) summary
    cl01107
    Location:51 → 243
    DUF502; Protein of unknown function (DUF502)

  2. NM_001333208.1 → NP_001321430.1  uncharacterized protein AT1G43130 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQW2

  3. NM_001333209.1 → NP_001321431.1  uncharacterized protein AT1G43130 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQW2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C8C1.1

Gene LinkOut

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