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inactive purple acid phosphatase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840847, updated on 18-Sep-2024

Summary

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Official Full Name
inactive purple acid phosphatase-like protein
Primary source
TAIR:AT1G42430
Locus tag
AT1G42430
See related
Araport:AT1G42430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7F22.5; F7F22_5
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (15891281..15894576)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene pre-rRNA-processing TSR1-like protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EARLY STARVATION 1 Is a Functionally Conserved Protein Promoting Gravitropic Responses in Plants by Forming Starch Granules. Song K, et al. Front Plant Sci, 2021. PMID 34367195, Free PMC Article
  2. EARLY STARVATION1 specifically affects the phosphorylation action of starch-related dikinases. Malinova I, et al. Plant J, 2018 Jul. PMID 29681129
  3. LIKE EARLY STARVATION 1 alters the glucan structures at the starch granule surface and thereby influences the action of both starch-synthesizing and starch-degrading enzymes. Singh A, et al. Plant J, 2022 Aug. PMID 35665549
  4. The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves. Feike D, et al. Plant Cell, 2016 Jun. PMID 27207856, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001198218.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables starch binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables starch binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within_positive_effect negative gravitropism IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_positive_effect positive gravitropism IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of alpha-glucan metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of starch metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of starch metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of starch metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_positive_effect starch granule initiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in starch grain IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
inactive purple acid phosphatase-like protein
NP_001185147.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3).
NP_174971.5
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    15891281..15894576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103431.7 → NP_174971.5  inactive purple acid phosphatase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174971.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I9G2, Q9SHN5
    UniProtKB/TrEMBL
    A0A178WPB0, A0A654EFS6

  2. NM_001198218.1 → NP_001185147.1  inactive purple acid phosphatase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185147.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EFS6, F4I9G3
Nucleotide Protein
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