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HDG10 homeodomain GLABROUS 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840369, updated on 18-Sep-2024

Summary

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Official Symbol
HDG10
Official Full Name
homeodomain GLABROUS 10
Primary source
TAIR:AT1G34650
Locus tag
AT1G34650
See related
Araport:AT1G34650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21H2.11; F21H2_11; homeodomain GLABROUS 10
Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
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Genomic context

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See HDG10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (12692995..12697834)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene peptidase Neighboring gene pseudo Neighboring gene myb domain protein 93

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AIL and HDG proteins act antagonistically to control cell proliferation. Horstman A, et al. Development, 2015 Feb 1. PMID 25564655
  2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_103188.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
homeodomain GLABROUS 10
NP_174724.1
  • homeodomain GLABROUS 10 (HDG10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: anther; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 9 (TAIR:AT5G17320.1); Has 4341 Blast hits to 4336 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 2723; Fungi - 164; Plants - 1399; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12692995..12697834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103188.3 → NP_174724.1  homeodomain GLABROUS 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174724.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LNM7, Q9S9Z0
    UniProtKB/TrEMBL
    A0A178W663
    Conserved Domains (2) summary
    cd08875
    Location:222 → 452
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:20 → 72
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S9Z0.1

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