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Tmem18 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840336, updated on 18-Sep-2024

Summary

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Official Full Name
Tmem18
Primary source
TAIR:AT1G34350
Locus tag
AT1G34350
See related
Araport:AT1G34350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7P12.4; F7P12_4
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (12534426..12536162)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene forkhead-associated (FHA) domain-containing protein Neighboring gene translation initiation factor 3 (IF-3) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtTMEM18 plays important roles in pollen tube and vegetative growth in Arabidopsis. Dou XY, et al. J Integr Plant Biol, 2016 Jul. PMID 26699939, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TMEM18 is important for plant growth in Arabidopsis.
    Title: AtTMEM18 plays important roles in pollen tube and vegetative growth in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_103157.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within callose deposition in cell wall IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen germination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
colocalizes_with nuclear outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Tmem18
NP_001185136.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.
NP_564444.1
  • unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12534426..12536162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198207.1 → NP_001185136.1  Tmem18 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185136.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EGV4, F4HUY1, Q8LCP2
    Conserved Domains (1) summary
    pfam14770
    Location:37 → 181
    TMEM18; Transmembrane protein 18

  2. NM_103157.4 → NP_564444.1  Tmem18 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564444.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WLP5, A0A654EGV4, Q67Y14, Q8LCP2
    Conserved Domains (1) summary
    pfam14770
    Location:39 → 156
    TMEM18; Transmembrane protein 18
Nucleotide Protein
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