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Pseudouridine synthase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840314, updated on 18-Sep-2024

Summary

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Official Full Name
Pseudouridine synthase family protein
Primary source
TAIR:AT1G34150
Locus tag
AT1G34150
See related
Araport:AT1G34150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12G12.3; F12G12_3
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Sequence:
Chromosome: 1; NC_003070.9 (12435882..12439499)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene staurosporin and temperature sensitive 3-like b Neighboring gene poly(A) binding protein 1 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene AUXIN RESPONSE FACTOR 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. Yu F, et al. Plant Cell, 2008 Jul. PMID 18599582, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_103138.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables pseudouridine synthase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pseudouridine synthase family protein
NP_564438.1
  • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 7569 Blast hits to 7566 proteins in 2644 species: Archae - 155; Bacteria - 5313; Metazoa - 277; Fungi - 265; Plants - 164; Viruses - 0; Other Eukaryotes - 1395 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12435882..12439499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103138.3 → NP_564438.1  Pseudouridine synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564438.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBG8, A0A5S9WNI7, A0A654EKD7, Q9C5K6
    Conserved Domains (1) summary
    cd02569
    Location:94 → 349
    PseudoU_synth_ScPus3; Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like
Nucleotide Protein
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