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Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840303, updated on 18-Sep-2024

Summary

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Official Full Name
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Primary source
TAIR:AT1G34060
Locus tag
AT1G34060
See related
Araport:AT1G34060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12G12.12; F12G12_12
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (12396397..12398418, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene uncharacterized protein Neighboring gene Ankyrin repeat family protein Neighboring gene S-adenosylmethionine carrier 2 Neighboring gene Copia-like polyprotein/retrotransposon

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001333083.1
NM_103128.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbon-sulfur lyase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NP_564435.1
  • Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: carbon-sulfur lyase activity, pyridoxal phosphate binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), EGF-like, alliinase (InterPro:IPR006947), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G34040.1); Has 224 Blast hits to 224 proteins in 37 species: Archae - 6; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12396397..12398418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103128.4 → NP_564435.1  Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564435.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93Z38, Q9FX14
    UniProtKB/TrEMBL
    A0A178WM00
    Conserved Domains (3) summary
    COG0436
    Location:91 → 449
    AspB; Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]
    pfam04864
    Location:91 → 449
    Alliinase_C; Allinase
    pfam04863
    Location:37 → 89
    EGF_alliinase; Alliinase EGF-like domain

  2. NM_001333083.1 → NP_001321766.1  Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARY5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93Z38.2

Gene LinkOut

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