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P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840294, updated on 18-Sep-2024

Summary

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Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT1G33970
Locus tag
AT1G33970
See related
Araport:AT1G33970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12G12.21; F12G12_21
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (12349304..12351318, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Avirulence induced gene (AIG1) family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Smg-4/UPF3 family protein Neighboring gene methyl esterase 14 Neighboring gene one-helix protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The IMMUNE-ASSOCIATED NUCLEOTIDE-BINDING 9 Protein Is a Regulator of Basal Immunity in Arabidopsis thaliana. Wang Y, et al. Mol Plant Microbe Interact, 2019 Jan. PMID 29958083
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036059.2
NM_001036060.3
NM_001084178.2
NM_001198205.2
NM_103119.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
colocalizes_with plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_001031136.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G09950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001031137.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G33900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001077647.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G09950.1); Has 5286 Blast hits to 4352 proteins in 536 species: Archae - 103; Bacteria - 667; Metazoa - 2039; Fungi - 248; Plants - 262; Viruses - 31; Other Eukaryotes - 1936 (source: NCBI BLink).
NP_001185134.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G09950.1).
NP_564431.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G09950.1); Has 5286 Blast hits to 4352 proteins in 536 species: Archae - 103; Bacteria - 667; Metazoa - 2039; Fungi - 248; Plants - 262; Viruses - 31; Other Eukaryotes - 1936 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12349304..12351318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084178.2 → NP_001077647.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077647.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HT21, F4HT25, Q8H7C8, Q9C8V3, Q9FE56
    UniProtKB/TrEMBL
    A0A178WH03, A0A5S9WNG4
    Conserved Domains (2) summary
    PTZ00121
    Location:193 → 335
    PTZ00121; MAEBL; Provisional
    pfam04548
    Location:25 → 239
    AIG1; AIG1 family

  2. NM_001198205.2 → NP_001185134.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185134.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HT21, F4HT25, Q8H7C8, Q9C8V3, Q9FE56
    UniProtKB/TrEMBL
    A0A178WH03, A0A5S9WNG4
    Conserved Domains (2) summary
    PTZ00121
    Location:193 → 335
    PTZ00121; MAEBL; Provisional
    pfam04548
    Location:25 → 239
    AIG1; AIG1 family

  3. NM_001036059.2 → NP_001031136.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031136.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HT21, F4HT25, Q8H7C8, Q9C8V3, Q9FE56
    UniProtKB/TrEMBL
    A0A178WH03, A0A5S9WNG4
    Conserved Domains (2) summary
    PTZ00121
    Location:193 → 335
    PTZ00121; MAEBL; Provisional
    pfam04548
    Location:25 → 239
    AIG1; AIG1 family

  4. NM_103119.5 → NP_564431.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564431.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HT21, F4HT25, Q8H7C8, Q9C8V3, Q9FE56
    UniProtKB/TrEMBL
    A0A178WH03, A0A5S9WNG4
    Conserved Domains (2) summary
    PTZ00121
    Location:193 → 335
    PTZ00121; MAEBL; Provisional
    pfam04548
    Location:25 → 239
    AIG1; AIG1 family

  5. NM_001036060.3 → NP_001031137.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031137.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WH03
    Conserved Domains (1) summary
    pfam04548
    Location:25 → 239
    AIG1; AIG1 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HT21.1

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