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KH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840259, updated on 18-Sep-2024

Summary

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Official Full Name
KH domain-containing protein
Primary source
TAIR:AT1G33680
Locus tag
AT1G33680
See related
Araport:AT1G33680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14M2.18; F14M2_18
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (12203945..12208698)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Beta-glucosidase, GBA2 type family protein Neighboring gene ncRNA Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_103088.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
KH domain-containing protein
NP_174629.3
  • KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 52223 Blast hits to 31714 proteins in 1554 species: Archae - 80; Bacteria - 6342; Metazoa - 24247; Fungi - 9116; Plants - 4309; Viruses - 323; Other Eukaryotes - 7806 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12203945..12208698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103088.4 → NP_174629.3  KH domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174629.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WLJ7, Q0WLY0
    Conserved Domains (2) summary
    cd00105
    Location:322 → 386
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:233 → 298
    KH_1; KH domain
Nucleotide Protein
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