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SBP (S-ribonuclease binding protein) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840168, updated on 18-Sep-2024

Summary

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Official Full Name
SBP (S-ribonuclease binding protein) family protein
Primary source
TAIR:AT1G32740
Locus tag
AT1G32740
See related
Araport:AT1G32740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6N18.12; F6N18_12
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (11844660..11846347)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cytochrome C oxidase polypeptide VIB family protein Neighboring gene electron carrier/iron ion-binding protein Neighboring gene HAC13 protein (HAC13) Neighboring gene ncRNA Neighboring gene Glutaredoxin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001333017.1
NM_001333018.1
NM_001333019.1
NM_103008.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SBP (S-ribonuclease binding protein) family protein
NP_564408.1
  • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G17680.1); Has 798 Blast hits to 798 proteins in 121 species: Archae - 0; Bacteria - 4; Metazoa - 316; Fungi - 15; Plants - 388; Viruses - 21; Other Eukaryotes - 54 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    11844660..11846347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_103008.4 → NP_564408.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564408.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EG31, Q8LCK5
    Conserved Domains (1) summary
    pfam13920
    Location:265 → 299
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  2. NM_001333017.1 → NP_001323257.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWK1, Q9LPJ0

  3. NM_001333018.1 → NP_001323258.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWK1, Q9LPJ0

  4. NM_001333019.1 → NP_001323256.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWG5, A0A654EG31
Nucleotide Protein
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