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ABCI7 non-intrinsic ABC protein 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840144, updated on 18-Sep-2024

Summary

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Official Symbol
ABCI7
Official Full Name
non-intrinsic ABC protein 6
Primary source
TAIR:AT1G32500
Locus tag
AT1G32500
See related
Araport:AT1G32500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATNAP6; ATP-binding cassette I7; F5D14.28; F5D14_28; NAP6; non-intrinsic ABC protein 6
Summary
Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.
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Genomic context

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See ABCI7 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (11749798..11752190, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene isocitrate dehydrogenase IV Neighboring gene RNA helicase family protein Neighboring gene pseudo Neighboring gene NAC domain containing protein 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unique genetic compartmentalization of the SUF system in cryptophytes and characterization of a SufD mutant in Arabidopsis thaliana. Hjorth E, et al. FEBS Lett, 2005 Feb 14. PMID 15710401
  2. AtNAP7 is a plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Xu XM, et al. Proc Natl Acad Sci U S A, 2004 Jun 15. PMID 15184673, Free PMC Article
  3. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
  4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102985.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within iron-sulfur cluster assembly IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within thylakoid membrane organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in plastid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
non-intrinsic ABC protein 6
NP_564404.1
  • non-intrinsic ABC protein 6 (NAP6); CONTAINS InterPro DOMAIN/s: SUF system FeS cluster assembly, SufBD (InterPro:IPR000825); BEST Arabidopsis thaliana protein match is: ATP binding cassette protein 1 (TAIR:AT4G04770.1); Has 9763 Blast hits to 9763 proteins in 1806 species: Archae - 246; Bacteria - 6215; Metazoa - 1; Fungi - 6; Plants - 107; Viruses - 0; Other Eukaryotes - 3188 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    11749798..11752190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102985.4 → NP_564404.1  non-intrinsic ABC protein 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564404.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCI4, Q9LQK7
    UniProtKB/TrEMBL
    A0A178WFX7, A0A384LFE4, A0A5S9WN02, Q058Q9
    Conserved Domains (1) summary
    pfam01458
    Location:223 → 450
    UPF0051; Uncharacterized protein family (UPF0051)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LQK7.1

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