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ESP3 RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840143, updated on 18-Sep-2024

Summary

Official Symbol
ESP3
Official Full Name
RNA helicase family protein
Primary source
TAIR:AT1G32490
Locus tag
AT1G32490
See related
Araport:AT1G32490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMB2733; EMBRYO DEFECTIVE 2733; ENHANCED SILENCING PHENOTYPE 3; F5D14.27; F5D14_27
Summary
Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing.
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Genomic context

See ESP3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
28
Sequence:
Chromosome: 1; NC_003070.9 (11742006..11749788, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Single hybrid motif superfamily protein Neighboring gene isocitrate dehydrogenase IV Neighboring gene non-intrinsic ABC protein 6 Neighboring gene pseudo

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

General gene information

NM_001198198.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA helicase activity  
enables nucleic acid binding  
Component Evidence Code Pubs
located_in membrane PubMed 
located_in nucleus PubMed 
located_in nucleus  

General protein information

Preferred Names
RNA helicase family protein
NP_001185127.1
  • ENHANCED SILENCING PHENOTYPE 3 (ESP3); FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: RNA splicing, posttranscriptional gene silencing by RNA, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein (TAIR:AT2G35340.1).
NP_174527.2
  • ENHANCED SILENCING PHENOTYPE 3 (ESP3); FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: RNA splicing, posttranscriptional gene silencing by RNA, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein (TAIR:AT2G35340.1); Has 34186 Blast hits to 25955 proteins in 2213 species: Archae - 99; Bacteria - 5536; Metazoa - 12019; Fungi - 3203; Plants - 1844; Viruses - 1463; Other Eukaryotes - 10022 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    11742006..11749788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102984.5 → NP_174527.2  RNA helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174527.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VY00, Q9LQK8
    UniProtKB/TrEMBL
    A0A178W3A5, A0A7G2DUU5
    Conserved Domains (2) summary
    PTZ00121
    Location:112 → 391
    PTZ00121; MAEBL; Provisional
    COG1643
    Location:365 → 1034
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
  2. NM_001198198.1 → NP_001185127.1  RNA helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185127.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DUU5, F4IE90
    Conserved Domains (5) summary
    smart00490
    Location:620 → 722
    HELICc; helicase superfamily c-terminal domain
    smart00847
    Location:792 → 877
    HA2; Helicase associated domain (HA2) Add an annotation
    COG1643
    Location:355 → 1024
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd00046
    Location:411 → 549
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam07717
    Location:901 → 1011
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
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