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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840074, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT1G31840
Locus tag
AT1G31840
See related
Araport:AT1G31840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5M6.15; F5M6_15
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (11423906..11426818)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Amino acid permease family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene histidine biosynthesis bifunctional protein (HISIE) Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_001185123.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1).
NP_174467.4
  • Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 68904 Blast hits to 14697 proteins in 297 species: Archae - 6; Bacteria - 66; Metazoa - 698; Fungi - 1025; Plants - 65043; Viruses - 0; Other Eukaryotes - 2066 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    11423906..11426818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198194.1 → NP_001185123.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185123.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IAZ1
    Conserved Domains (4) summary
    TIGR00756
    Location:748 → 782
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:644 → 671
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:281 → 313
    PPR_1; PPR repeat
    pfam13041
    Location:284 → 333
    PPR_2; PPR repeat family

  2. NM_102921.5 → NP_174467.4  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174467.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IAZ0, Q9C6S6
    Conserved Domains (4) summary
    TIGR00756
    Location:777 → 811
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:673 → 700
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:281 → 313
    PPR_1; PPR repeat
    pfam13041
    Location:284 → 333
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C6S6.2

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