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Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840033, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR-like) superfamily protein
Primary source
TAIR:AT1G31430
Locus tag
AT1G31430
See related
Araport:AT1G31430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T8E3.8; T8E3_8
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (11253912..11255745, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TRAF-like family protein Neighboring gene putrescine-binding periplasmic protein-like protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene SH3 domain-containing protein Neighboring gene Eukaryotic aspartyl protease family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001332963.1
NM_102882.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR-like) superfamily protein
NP_001319122.1
  • Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 41733 Blast hits to 13930 proteins in 242 species: Archae - 0; Bacteria - 11; Metazoa - 58; Fungi - 74; Plants - 41075; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    11253912..11255745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332963.1 → NP_001319122.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C866
    UniProtKB/TrEMBL
    A0A7G2DXE3

  2. NM_102882.2 → NP_174428.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174428.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C866
    UniProtKB/TrEMBL
    A0A7G2DXE3
    Conserved Domains (7) summary
    COG0457
    Location:3 → 268
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    TIGR00756
    Location:186 → 217
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:347 → 374
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:245 → 275
    PPR; PPR repeat
    pfam12854
    Location:420 → 443
    PPR_1; PPR repeat
    pfam13041
    Location:242 → 291
    PPR_2; PPR repeat family
    pfam14432
    Location:520 → 565
    DYW_deaminase; DYW family of nucleic acid deaminases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C866.1

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