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TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840018, updated on 18-Sep-2024

Summary

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Official Full Name
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Primary source
TAIR:AT1G31300
Locus tag
AT1G31300
See related
Araport:AT1G31300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19E23.9; T19E23_9
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (11193625..11196397)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Argonaute family protein Neighboring gene ARGONAUTE 3 Neighboring gene ncRNA Neighboring gene hydroxyproline-rich glycoprotein family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036044.2
NM_001332954.1
NM_102868.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
NP_001031121.1
  • TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT4G19645.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_564377.1
  • TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT4G19645.2); Has 633 Blast hits to 633 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 146; Plants - 152; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    11193625..11196397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036044.2 → NP_001031121.1  TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031121.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WC93, A0A384LBS0, B9DGS4, Q93Z82
    Conserved Domains (1) summary
    smart00724
    Location:71 → 272
    TLC; TRAM, LAG1 and CLN8 homology domains

  2. NM_102868.4 → NP_564377.1  TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564377.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WC93, A0A384LBS0, B9DGS4, Q93Z82
    Conserved Domains (1) summary
    smart00724
    Location:71 → 272
    TLC; TRAM, LAG1 and CLN8 homology domains

  3. NM_001332954.1 → NP_001322744.1  TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WC93, A0A384LBS0, B9DGS4, Q93Z82
    Conserved Domains (1) summary
    smart00724
    Location:71 → 272
    TLC; TRAM, LAG1 and CLN8 homology domains
Nucleotide Protein
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