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VSR6 VACUOLAR SORTING RECEPTOR 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839974, updated on 18-Sep-2024

Summary

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Official Symbol
VSR6
Official Full Name
VACUOLAR SORTING RECEPTOR 6
Primary source
TAIR:AT1G30900
Locus tag
AT1G30900
See related
Araport:AT1G30900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
binding protein of 80 kDa 3;3; BP80-3;3; F17F8.23; VACUOLAR SORTING RECEPTOR 3;3; VACUOLAR SORTING RECEPTOR 6; VSR3;3
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Genomic context

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See VSR6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (10996870..11000809)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene uncharacterized protein Neighboring gene Integral membrane HRF1 family protein Neighboring gene Molybdenum cofactor sulfurase family protein Neighboring gene F-box family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The plant vacuolar sorting receptor AtELP is involved in transport of NH(2)-terminal propeptide-containing vacuolar proteins in Arabidopsis thaliana. Ahmed SU, et al. J Cell Biol, 2000 Jun 26. PMID 10871276, Free PMC Article
  2. AtVPS45 complex formation at the trans-Golgi network. Bassham DC, et al. Mol Biol Cell, 2000 Jul. PMID 10888666, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_102827.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein targeting to vacuole TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
VACUOLAR SORTING RECEPTOR 6
NP_174375.1
  • VACUOLAR SORTING RECEPTOR 6 (VSR6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 5 (TAIR:AT2G34940.1); Has 12335 Blast hits to 5905 proteins in 215 species: Archae - 2; Bacteria - 51; Metazoa - 11201; Fungi - 6; Plants - 368; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10996870..11000809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102827.2 → NP_174375.1  VACUOLAR SORTING RECEPTOR 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174375.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I7T2, Q9FYH7
    UniProtKB/TrEMBL
    A0A178WI38, A0A5S9WFU1
    Conserved Domains (3) summary
    smart00179
    Location:513 → 541
    EGF_CA; Calcium-binding EGF-like domain
    cl28883
    Location:52 → 175
    PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
    pfam12662
    Location:498 → 516
    cEGF; Complement Clr-like EGF-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FYH7.3

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