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elongation factor G, putative (DUF668) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839956, updated on 18-Sep-2024

Summary

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Official Full Name
elongation factor G, putative (DUF668)
Primary source
TAIR:AT1G30755
Locus tag
AT1G30755
See related
Araport:AT1G30755
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PSI2; PSK SIMULATOR 2
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (10905731..10909760, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FAD-binding Berberine family protein Neighboring gene TPRXL Neighboring gene uncharacterized protein Neighboring gene FAD-binding Berberine family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The PSI family of nuclear proteins is required for growth in arabidopsis. Stührwohldt N, et al. Plant Mol Biol, 2014 Oct. PMID 25062973
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PSI2 protein has a role in Arabidopsis growth.
    Title: The PSI family of nuclear proteins is required for growth in arabidopsis.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001332922.1
NM_001332923.1
NM_001332924.1
NM_001332926.1
NM_102812.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in positive regulation of growth IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
elongation factor G, putative (DUF668)
NP_564362.1
  • Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT1G34320.1); Has 465 Blast hits to 399 proteins in 71 species: Archae - 2; Bacteria - 14; Metazoa - 66; Fungi - 16; Plants - 336; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10905731..10909760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332925.1 → NP_001320551.1  elongation factor G, putative (DUF668) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L5Y3, Q9SA91
    UniProtKB/TrEMBL
    A0A178WN85, A0A654EJE8
    Conserved Domains (2) summary
    pfam05003
    Location:354 → 438
    DUF668; Protein of unknown function (DUF668)
    pfam11961
    Location:136 → 192
    DUF3475; Domain of unknown function (DUF3475)

  2. NM_102812.3 → NP_564362.1  elongation factor G, putative (DUF668) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564362.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L5Y3, Q9SA91
    UniProtKB/TrEMBL
    A0A178WN85, A0A654EJE8
    Conserved Domains (2) summary
    pfam05003
    Location:354 → 438
    DUF668; Protein of unknown function (DUF668)
    pfam11961
    Location:136 → 192
    DUF3475; Domain of unknown function (DUF3475)

  3. NM_001332923.1 → NP_001320553.1  elongation factor G, putative (DUF668) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLF6, A0A1P8AN72

  4. NM_001332924.1 → NP_001320550.1  elongation factor G, putative (DUF668) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLF6, A0A1P8AN59

  5. NM_001332922.1 → NP_001320552.1  elongation factor G, putative (DUF668) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLF6, A0A1P8AN59

  6. NM_001332926.1 → NP_001320549.1  elongation factor G, putative (DUF668) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L5Y3, Q9SA91
    UniProtKB/TrEMBL
    A0A178WN85, A0A654EJE8
    Conserved Domains (2) summary
    pfam05003
    Location:354 → 438
    DUF668; Protein of unknown function (DUF668)
    pfam11961
    Location:136 → 192
    DUF3475; Domain of unknown function (DUF3475)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SA91.2

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